Yoonkang Hur
  • Ph. D.
  • DONGHWAN SHIM
  • Plant Big-data Analysis
  • N11-309
  • Laboratory of Plant Big-data Analysis (N11-310)
  • +82-42-821-6279
  • dshim104@cnu.ac.kr

Academic Career

  • Ph.D., 2010, Pohang University of Science and Technology (POSTECH)

Career

  • Forestry Researcher, 2015.-2020, National Institute of Forest Science (NIFoS)
  • Post-Doc., 2014-2015, Rural Development Administration (RDA)
  • Post-Doc.,2011-2014, Pennsylvania State University (PSU) – University Park, PA, USA

Research Interests

  • Plant Big-data Analysis including Phenomics

  • Plant Genomics and Transcriptomics

  • Cell-specific gene expression analysis using Single Cell RNAseq>

  • Biomarker development using artificial intelligence(AI)

  • New plant science research combined ICT & BI

Selected Publication

  • Bae Young Choi, Donghwan Shim, Fantao Kong, Pascaline Auroy, Yuree Lee, Yonghua Li‐Beisson, Youngsook Lee, Yasuyo Yamaoka (2022) The Chlamydomonas transcription factor MYB1 mediates lipid accumulation under nitrogen depletion. New Phytologist. Online publication. https://doi.org/10.1111/nph.18141
  • Ju Young Ahn, Jaewook Kim, Ju Yeon Yang, Hyun Ju Lee, Soyun Kim, Kwang-Soo Cho, Sang-Ho Lee, Jin-Hyun Kim, Tae-Ho Lee, Yoonkang Hur, Donghwan Shim† (2022) Comparative Transcriptome Analysis between Two Potato Cultivars in Tuber Induction to Reveal Associated Genes with Anthocyanin Accumulation. International Journal of Molecular Sciences 23(7), 3681
  • Bae Young Choi, Hanul Kim, Donghwan Shim, Sunghoon Jang, Yasuyo Yamaoka, Seungjun Shin, Takashi Yamano, Masataka Kajikawa, EonSeon Jin, Hideya Fukuzawa, Youngsook Lee (2022) The Chlamydomonas bZIP transcription factor BLZ8 confers oxidative stress tolerance by inducing the carbon-concentrating mechanism. The Plant Cell 34(2), 910-926
  • Jinsoo Kim, Woo-Ri Shin, Yang-Hoon Kim, Donghwan Shim†, Hojin Ryu† (2021) Functional characterization of gibberellin signaling-related genes in Panax ginseng. Journal of Plant Biotechnology 48(3), 148-155
  • Il-Hwan Lee, Ho Soo Kim, Ki Jung Nam, Kang-Lok Lee, Jung-Wook Yang, Sang-Soo Kwak, Jeung Joo Lee, Donghwan Shim†, Yun-Hee Kim (2021) The defense response involved in sweetpotato resistance to root-knot nematode Meloidogyne incognita: comparison of root transcriptomes of resistant and susceptible sweetpotato cultivars with respect to induced and constitutive defense responses. Frontiers in Plant Science 12, 828
  • Hyejin An, Hwa-Yong Lee, Donghwan Shim, Seong Ho Choi, Hyunwoo Cho, Tae Kyung Hyun, Ick-Hyun Jo, Jong-Wook Chung (2021) Development of CAPS Markers for Evaluation of Genetic Diversity and Population Structure in the Germplasm of Button Mushroom (Agaricus bisporus) Journal of Fungi 7(5), 375
  • Hye-In Kang, Chae-Bin Lee, Soon-Ho Kwon, Ji-Min Park, Kyu-Suk Kang, Donghwan Shim† (2021) Comparative transcriptome analysis during developmental stages of direct somatic embryogenesis in Tilia amurensis Rupr. Scientific reports 11(1), 1-10
  • Soon-Ho Kwon, Yang-Gil Kim, Hye-In Kang, Donghwan Shim, Kyu-Suk Kang (2021) Morphology of strobili at different development positions and cone and seed characteristics of Pinus densiflora f. multicaulis. Dendrobiology 85, 51-59
  • Dong-Hwan Shim, Yun-Hee Kim (2020) Isolation and Expression Analysis of a WRKY Transcription Factor in Sweet potato. Journal of Agriculture & Life Science 54(4), 1-5
  • In Sik Kim, Kyung Mi Lee, Donghwan Shim, Jin Jung Kim, Hye-In Kang (2020) Plus Tree Selection of Quercus salicina Blume and Q. glauca Thunb. and Its Implications in Evergreen Oaks Breeding in Korea. Forests 11(7), 735
  • Sang Hyeon Lee, Donghwan Shim*, Kang‑Lok Lee, Ki Jung Nam, Jung‑Wook Yang, Jeung Joo Lee, Yun‑Hee Kim (2020) Expression analysis of sweetpotato NADPH oxidase‑encoding Rboh genes in response to infection with the root‑knot nematode Meloidogyne incognita. Plant Biotechnology Reports 14:635-642
  • Hyemin Kim*, Donghwan Shim*, Suyun Moon, Jinsu Lee, Wonsil Bae, Hyunmo Choi, Kyunghwan Kim, Hojin Ryu (2019) Transcriptional network regulation of the brassinosteroid signaling pathway by the BES1–TPL–HDA19 co-repressor complex. Planta 250(4):1371-1377
  • Min-Ha Kim, Jin-Seong cho, Hyung-Woo Jeon, Kanidta Sangsawang, Donghwan Shim, Youn- Im Choi, Eung-Jun Park, Hyoshin Lee, and Jae-Heung Ko (2019) Wood Transcriptome Profiling Identifies Critical Pathway Genes of Secondary Wall Biosynthesis and Novel Regulators for Vascular Cambium Development in Populus. Genes 10(690)
  • Il Hwan Lee, Hyerim Han, Young Ho Koh, In Sik Kim, Seok-Woo Lee, and Donghwan Shim† (2019) Comparative Transcriptome Analysis of Pinus densiflora Following Inoculation with Pathogenic (Bursaphelenchus xylophilus) or Non-pathogenic Nematodes (B. thailandae). Scientific reports 9:12180
  • Yeon Woo Sung*, Il Hwan Lee*, Donghwan Shim*, Kang-Lok Lee, Ki Jung Nam, Jung-Wook Yang, Jeung Joo Lee, Sang-Soo Kwak, Yun-Hee Kim (2019) Transcriptomic changes in sweetpotato peroxidases in response to infection with the root-knot nematode Meloidogyne incognita. Molecular Biology Reports 46(4):4555-4564
  • Hye-In Kang*, Hyun Oh Lee*, Il Hwan Lee, In Sik Kim, Seok-Woo Lee, Tae Jin Yang and Donghwan Shim† (2019) Complete Chloroplast Genome of Pinus densiflora Siebold & Zucc. and Comparative Analysis with Five Pine Trees. Forests 10(7):600
  • Jinsu Lee, Seahee Han, Hwa-Yong Lee, Bomi Jeong, Tae-Young Heo, Tae Kyung Hyun, Kyunghwan Kim, Byoung Il Je, Horim Lee, Donghwan Shim, Soon Ju Park, Hojin Ryu (2019) Brassinosteroids facilitate xylem differentiation and wood formation in tomato. Planta 249(5):1391-1403
  • Hee Chung, Jaebok Lee, Jinsu Gil, Yurry Um, Ji Hyun Kim, Min Yeong Hwang, Ho Bang Kim, Chang Pyo Hong, Shin Gi Park, Donghwan Shim, Yi Lee (2019) Development of Polymorphic SSR Markers from Pinus densiflora (Pinaceae) Natural Population in Korea. Plant Breeding and Biotechnology 7(1):67-71
  • Il Hwan Lee*, Donghwan Shim*, Jea Cheol Jeong*, Yeon Woo Sung, Ki Jung Nam, Jung-Wook Yang, Joon Ha, Jeung Joo Lee, Yun-Hee Kim (2019) Transcriptome analysis of root-knot nematode (Meloidogyne incognita)-resistant and susceptible sweetpotato cultivars. Planta 249(2):431-444
  • Jin A Kim*, Donghwan Shim*, Shipra Kumari, Ha-eun Jung, Ki-Hong Jung, Heesu Jeong, Woe- Yeon Kim, Soo In Lee, Mi-Jeong Jeong (2019) Transcriptome Analysis of Diurnal Gene Expression in Chinese Cabbage. Genes 10(2):130
  • Il Hwan Lee, Jinjoong Kim, Kwan-Soo Woo, Kyung-Hwan Jang, Yun-Hee Kim, Donghwan Shim†(2018) De novo assembly and transcriptome analysis of the Pinus densiflora response to pine wilt disease in nature. Plant Biotechnology Reports 12(3):229-236
  • Jinsu Lee*, Donghwan Shim*, Suyun Moon, Hyemin Kim, Wonsil Bae, Kyunghwan Kim, Yang- Hoon Kim, Sung-Keun Rhee, Chang Pyo Hong, Suk-Young Hong, Ye-Jin Lee, Jwakyung Sung, Hojin Ryu (2018) Genome-wide transcriptomic analysis of BR-deficient micro-tom reveals correlations between drought stress tolerance and brassinosteroid signaling in tomato. Plant Physiology and Biochemistry 127:553-560
  • Donghwan Shim, Ki Jung Nam, Yun-Hee Kim (2018) Analysis of Antioxidant Enzyme Activity During Seedling Growth of Leymus chinensis Trin Under Salt and Dehydration Stresses. Journal of Life Science 28(7):772-777
  • Inchan Choi*, Parthiban Subramanian*, Donghwan Shim, Byung-Ju Oh, Bum-Soo Hahn (2017) RNA-Seq of plant-parasitic RNA-seq of plant-parasitic nematode Meloidogyne incognita at various stages of its development. Frontiers in genetics 8:190
  • Sebastin Raveendar, Jung-Ro Lee, Donghwan Shim, Gi-An Lee, Young-Ah Jeon, Gyu-Taek Cho, Kyung-Ho Ma, Sok-Young Lee, Gi-Ho Sung, Jong-Wook Chung (2017) Comparative efficacy of four candidate DNA barcode regions for identification of Vicia species. Plant Genetic Resources 15(4):286-295
  • Suyun Moon*, Hwa-Yong Lee*, Donghwan Shim*, Myungkil Kim, Kang-Hyeon Ka, Rhim Ryoo, Han-Gyu Ko, Chang-Duck Koo, Jong-Wook Chung, Hojin Ryu (2017) Development and Molecular Characterization of Novel Polymorphic Genomic DNA SSR Markers in Lentinula edodes. Mycobiology 45(2):105-109
  • Hwa-Yong Lee*, Suyun Moon*, Donghwan Shim*, Chang Pyo Hong, Yi Lee, Chang-Duck Koo, Jong-Wook Chung and Hojin Ryu (2017) Development of 44 Novel Polymorphic SSR Markers for Determination of Shiitake Mushroom (Lentinula edodes) Cultivars. Genes 8(109)